Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

Article

Jeffares, Daniel C., Jolly, Clemency, Hoti, Mimoza, Speed, Doug, Shaw, Liam, Rallis, C., Balloux, Francois, Dessimoz, Christophe, Bähler, Jürg and Sedlazeck, Fritz J. 2017. Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast. Nature Communications. 8, p. 14061. https://doi.org/10.1038/ncomms14061
AuthorsJeffares, Daniel C., Jolly, Clemency, Hoti, Mimoza, Speed, Doug, Shaw, Liam, Rallis, C., Balloux, Francois, Dessimoz, Christophe, Bähler, Jürg and Sedlazeck, Fritz J.
Abstract

Large structural variations (SVs) within genomes are more challenging to identify than smaller genetic variants but may substantially contribute to phenotypic diversity and evolution. We analyse the effects of SVs on gene expression, quantitative traits and intrinsic reproductive isolation in the yeast Schizosaccharomyces pombe. We establish a high-quality curated catalogue of SVs in the genomes of a worldwide library of S. pombe strains, including duplications, deletions, inversions and translocations. We show that copy number variants (CNVs) show a variety of genetic signals consistent with rapid turnover. These transient CNVs produce stoichiometric effects on gene expression both within and outside the duplicated regions. CNVs make substantial contributions to quantitative traits, most notably intracellular amino acid concentrations, growth under stress and sugar utilization in winemaking, whereas rearrangements are strongly associated with reproductive isolation. Collectively, these findings have broad implications for evolution and for our understanding of quantitative traits including complex human diseases.

JournalNature Communications
Journal citation8, p. 14061
ISSN2041-1723
Year2017
PublisherNature Publishing Group
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Digital Object Identifier (DOI)https://doi.org/10.1038/ncomms14061
Web address (URL)https://doi.org/10.1038/ncomms14061
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Online24 Jan 2017
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Deposited07 Feb 2018
Accepted24 Nov 2016
Accepted24 Nov 2016
Copyright information© 2017 The authors
LicenseCC BY 4.0
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