Supplementary material for 'Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast'

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Jeffares, Daniel C., Jolly, Clemency, Hoti, Mimoza, Speed, Doug, Shaw, Liam, Rallis, Charalampos, Balloux, Francois, Dessimoz, Christophe, Bähler, Jürg and Sedlazeck, Fritz J. 2017. Supplementary material for 'Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast'. Nature Publishing Group. https://doi.org/10.1038/ncomms14061
AuthorsJeffares, Daniel C., Jolly, Clemency, Hoti, Mimoza, Speed, Doug, Shaw, Liam, Rallis, Charalampos, Balloux, Francois, Dessimoz, Christophe, Bähler, Jürg and Sedlazeck, Fritz J.
Abstract

Supplementary data for Jeffares, D., Jolly, C., Hoti, M. et al. Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast. Nat Commun 8, 14061 (2017). https://doi.org/10.1038/ncomms14061

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Angeli gene enrichement with all genes that overlap CNVs (XLSX 102 kb)

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CNV standard deviation by cluster (XLSX 103 kb)

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Duplications and expression microarrays. (XLSX 51 kb)

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Genes up or downregulated in arrays (XLSX 52 kb)

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Heritability estimates for 228 traits (XLSX 77 kb)

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Strains used in this study. (XLSX 61 kb)

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All variants significant in GWAS (XLSX 103 kb)

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Kendall correlations and partial correlations between genetic distances and viability. (XLSX 50 kb)

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SV caller results on simulated data (XLSX 51 kb)

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Manual curation of initial population variant calls from cn.MOPS (XLSX 58 kb)

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Manual curation of variant calls. (XLSX 77 kb)

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Manual curation of copy number variants that segregate within one or more clonal clusters. (XLSX 59 kb)

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Translocation PCR result summary (XLSX 54 kb)

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Inversion PCR result summary (XLSX 54 kb)

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The 113 curated variants, with MAF and linkage information (XLSX 231 kb)

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Supplementary Figures 1-11 and Supplementary References (PDF 1026 kb)

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Peer Review File (PDF 10181 kb)

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OutputTransient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
Year2017
PublisherNature Publishing Group
Digital Object Identifier (DOI)https://doi.org/10.1038/ncomms14061
Web address (URL)https://www.nature.com/articles/ncomms14061
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